the SBML module of BiVeS
When you’ve cloned the source code:
git clone https://github.com/SemsProject/BiVeS-SBML
There are two supported options to build this project:
Maven is a build automation tool. We ship a pom.xml
together with the sources which tells maven about versions and dependencies. Thus, maven is able to resolve everything on its own and, in order to create the library, all you need to call is mvn package
:
usr@srv $ mvn package
-------------------------------------------------------
T E S T S
-------------------------------------------------------
Running de.unirostock.sems.TestParser
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.085 sec
Results :
Tests run: 1, Failures: 0, Errors: 0, Skipped: 0
mvn -q package 10.32s user 0.26s system 176% cpu 5.997 total
That done, you’ll find the binaries in the target
directory.
Ant is an Apache tool for automating software build processes. There is a build.xml
file included in the source code that tells ant what to do. Since ant is not able to resolve the dependencies you need to create a directory lib
containing the following libraries:
We defined multiple targets in the build.xml
. They can be displayed by calling ant -p
:
usr@srv $ ant -p
Buildfile: /path/to/BiVeS-SBML/build.xml
BiVeS - BioModel Version Control System
This package provides SBML integration for BiVeS
Main targets:
clean clean up
compile compile the source
dist generate the distribution
init initialize workspace
sign sign a dist
Default target: dist
clean up
will delete all compiled files and produced librariescompile
compiles the source codedist
bundles all compiled binaries into a jar libraryFor example, to create the jar library just run ant dist
:
usr@srv $ ant dist
Buildfile: /path/to/BiVeS-SBML/build.xml
init:
[mkdir] Created dir: /path/to/BiVeS-SBML/build
[mkdir] Created dir: /path/to/BiVeS-SBML/dist
compile:
[javac] Compiling 39 source files to /path/to/BiVeS-SBML/build
dist:
[jar] Building jar: /path/to/BiVeS-SBML/dist/BiVeS-SBML-1.2.5.jar
[jar] Building jar: /path/to/BiVeS-SBML/dist/BiVeS-SBML-1.2.5-fat.jar
BUILD SUCCESSFUL
Total time: 2 seconds