ReactionNetwork

• previously known as Chemical Reaction Network, but isn’t necessarily about chemicals..
• contains compartments, which may contain species and reactions
• may be directed connections between species and reactions -> relationships like reactants, products, modifiers etc

create a ReactionNetwork

TODO

export a ReactionNetwork

• API contains functionality to export a /ReactionNetwork to different graph formats:
• GraphML, e.g. to use it with CytoscapeWeb – see also Graphml Format Description
• DOT, e.g. to use it with GraphViz – see also Dot Format Description
• JSON, e.g. to use it with CytoscapeJS – see also Json Graph Format Description

also see HierarchyNetwork